rs263664555 SNP Detail

Summary

• ID
  rs263664555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78429813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGTTCT TATGCTTCTA
  ACTCTTCTAG CTTTATTATT TATTTATTTA TTTATTTATT TAATTAATTT ATTTTTGAGA
  CAGGGTTTCT TTGTGTAGCC CTGGCAGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT
  CGAACTCAAA AATCCGCCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CGTGCGCCAC
  Y
  ACCATGCGGC TTCTTCCAGC TTTATTAAGG AGTTCCAGTA GATTACCCAG TCTTATATCC
  ATCTTTCCAT GATGTTTATA TGATTCTTAC TAATAATTTA CTTCCTGAGG AACACAGGTG
  AGTTTGGGAA GAGGCGAGAA CGTATGCAGA TGAAATTCAC CAGACAGAAA GAACATGTCC
  AATAGGATCT GAGGCAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323016421	CHEV_9_78370338	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263664555					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78429813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1409 bp distal
Gm47430	predicted gene, 47430	374 bp downstream
Rr383643	regulatory region 383643	1912 bp upstream
Tssr86293	transcription start site region 86293	1826 bp downstream
Tssr86294	transcription start site region 86294	1796 bp downstream