rs263667056 SNP Detail

Summary

• ID
  rs263667056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120880032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGT TATAATCAAT CTTCAGAAAG
  Y
  ACAAAACCTT TTGGCAAGAT CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870963	CHEV_11_120850520	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263667056					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120880032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	935 bp proximal
Csnk1d	casein kinase 1, delta	within coordinates
Gm57327	predicted gene, 57327	1969 bp upstream
Rr403207	regulatory region 403207	1993 bp upstream
Rr461861	regulatory region 461861	1391 bp distal
Rr461862	regulatory region 461862	314 bp distal
Rr461863	regulatory region 461863	within coordinates
Rr461864	regulatory region 461864	284 bp proximal
Rr461865	regulatory region 461865	1701 bp proximal
Rr461866	regulatory region 461866	1853 bp proximal
Rr461867	regulatory region 461867	1876 bp proximal
Rr461868	regulatory region 461868	1980 bp proximal
Tssr106388	transcription start site region 106388	1352 bp upstream
Tssr112430	transcription start site region 112430	1814 bp downstream
Tssr112431	transcription start site region 112431	1833 bp downstream
Tssr112432	transcription start site region 112432	1872 bp downstream
Tssr112433	transcription start site region 112433	1897 bp downstream