rs263674296 SNP Detail

Summary

• ID
  rs263674296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99760028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTCCTC CAAAGGTGGC
  CCTTCACTCT CAGCTTCTCT CCTTTCTACC TCTCTCCTTC CCTCCCGTCC CCTTCTCTCT
  CCTCACCTCT CCCTTCTCTT CTTTCCGCTC CCCCCTGGCC CCCACCTCCC TAGAGATTAC
  TAAAGCAGAA GTACCGTTCT GCGAACTTCC AGGAGAATTT CAACATTTAG AAGCCAACTC
  Y
  TGCTTAGATC TCACCTGCTA CACTAGGGGA TTGGAGATCC AGAGATACTA ATTCTACTGG
  GTGATGGTAG CTGCTTTGGA AAGAAATGAG AGAAATAACC GTGTTTGCAG AGTGAGGACT
  CACCAGCCAC ACTTAGAGGT TTAGGCCATT GTAGTACAAC TTCTCAACTT CTTGGACATT
  GCTTAATGAG GGATCTGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137471	CHEV_9_99778394	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263674296					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99760028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1505 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1251 bp downstream
Rr685464	regulatory region 685464	1816 bp distal
Rr685465	regulatory region 685465	1315 bp distal
Rr685466	regulatory region 685466	within coordinates
Sox14	SRY (sex determining region Y)-box 14	1805 bp upstream
Tssr91083	transcription start site region 91083	1782 bp upstream
Tssr91084	transcription start site region 91084	1763 bp upstream