rs263675031 SNP Detail

Summary

• ID
  rs263675031
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTATTTA AGCCAAAGAA
  GAAATGGATT CTAAGCAGGA TATGTATTAT CATGTATACA TTTCTTAGAA TTCAGTTCAA
  AGTTTGGCTG GAGCAGATCA TTTCTGTCAG TAAATAAATG TGTTCTTCTT TTTCAGCTTA
  CAGACTGGAA CTAGAAGTGT TAGCCACCAT CATCATAGGA GAATAGGTCT CTGAATTCAT
  S
  CCTCCTCCCT TCAAATGACA GTTGGATGAA TACCAGTAGA ATGGCCTGAC TCTCCCTATT
  GGTTCATATC TTTCTCTCTA CTCCCAGGGG AATCAGGATA CTTTGGTGTG TAAAAGAAAC
  AGAAGGGTAA TTCTGTCTCT GGCCATACAT TCCATTATGA TATAGTTCTG AATGTTTGCA
  TCTATTTGTT CAATCATTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025271	MGP_WTSI_X_9014425	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263675031					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025271	MGP_WTSI_X_9014425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303538 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1800 bp downstream
Tssr160518	transcription start site region 160518	1298 bp downstream
Tssr160519	transcription start site region 160519	654 bp downstream
Tssr160520	transcription start site region 160520	590 bp downstream
Tssr160521	transcription start site region 160521	536 bp downstream
Tssr160522	transcription start site region 160522	419 bp downstream
Tssr162873	transcription start site region 162873	1651 bp upstream
Tssr162874	transcription start site region 162874	1395 bp upstream
Tssr162875	transcription start site region 162875	1372 bp upstream
Tssr162876	transcription start site region 162876	1216 bp upstream
Tssr162877	transcription start site region 162877	1197 bp upstream
Tssr162878	transcription start site region 162878	1145 bp upstream
Tssr162879	transcription start site region 162879	1039 bp upstream
Tssr162880	transcription start site region 162880	953 bp upstream
Tssr162881	transcription start site region 162881	935 bp upstream
Tssr162882	transcription start site region 162882	635 bp upstream
Tssr162883	transcription start site region 162883	245 bp upstream
Tssr162884	transcription start site region 162884	180 bp upstream
Tssr162885	transcription start site region 162885	144 bp upstream
Tssr162886	transcription start site region 162886	124 bp upstream
Tssr162887	transcription start site region 162887	86 bp upstream
Tssr162888	transcription start site region 162888	32 bp upstream
Tssr162889	transcription start site region 162889	14 bp upstream
Tssr162890	transcription start site region 162890	45 bp downstream
Tssr162891	transcription start site region 162891	79 bp downstream
Tssr162892	transcription start site region 162892	132 bp downstream
Tssr162893	transcription start site region 162893	236 bp downstream
Tssr162894	transcription start site region 162894	266 bp downstream
Tssr162895	transcription start site region 162895	326 bp downstream
Tssr162896	transcription start site region 162896	352 bp downstream
Tssr162897	transcription start site region 162897	379 bp downstream
Tssr162898	transcription start site region 162898	403 bp downstream
Tssr162899	transcription start site region 162899	549 bp downstream
Tssr162900	transcription start site region 162900	559 bp downstream
Tssr162901	transcription start site region 162901	590 bp downstream
Tssr162902	transcription start site region 162902	672 bp downstream
Tssr162903	transcription start site region 162903	733 bp downstream
Tssr162904	transcription start site region 162904	834 bp downstream
Tssr162905	transcription start site region 162905	918 bp downstream
Tssr162906	transcription start site region 162906	922 bp downstream
Tssr162907	transcription start site region 162907	995 bp downstream
Tssr162908	transcription start site region 162908	1019 bp downstream