rs263678979 SNP Detail

Summary

• ID
  rs263678979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24337436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCCCC TTTAAGTTTG
  TATTTTGAGA CAGGGTCTTA CTGAATAGCT CAGTTCGGCC CTTGTACTTA CTATGACGTT
  CAGACAGGCC CTTTTGGTTG TGAGTCTCCT CTTTCAGCTT CCTGAGTCAC CTGGTGGCTT
  GTACCACCAA GTCCGCTTTT GCTGGCGGCA GGGTCTCCTT ATGCAGTACA AGCTAGACTG
  S
  AACTCCAGAC CCCACTGCCT CAGCCTCCTC AGTAGCCGGG ATTGCAGGCT TGTACCACCG
  TGTTTGTCTC CTAGCCTTTC TCTTAAACTT TTTTTCTTCA GTCTCTTAAC TGGATCCTTC
  GGAAGCTACT TTCTGAGGCT CCTCCCCCTT TTGACGTAGT CGTTGAGGCT TCAGTTTGAG
  CCCGGCTCTC CAGGCTGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370789636	MGP_WTSI_7_25423030	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C	G	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263678979					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C	G	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370789636	MGP_WTSI_7_25423030	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24337436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	626 bp distal
Cpgi18555	CpG island 18555	326 bp proximal
Gm26550	predicted gene, 26550	95 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Tssr2135	transcription start site region 2135	1397 bp downstream
Tssr65017	transcription start site region 65017	1491 bp downstream
Tssr65018	transcription start site region 65018	1447 bp downstream
Tssr65019	transcription start site region 65019	1422 bp downstream
Tssr65020	transcription start site region 65020	765 bp upstream
Tssr65021	transcription start site region 65021	773 bp upstream