rs263692416 SNP Detail

Summary

• ID
  rs263692416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22712827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACACTC AAAGAAAGGG
  AGAAAAGTGG GCAACTAGAG AGAAGAAAGA ATGAAGCAGA ATGAAAGATA GCAAAGATAA
  TAAACCTTTC AAGATAAAAG CTAGCCCTCA GAGTCACTTC TTTGTAAAGA GAGCTCAGAA
  TAAGGACTAT GGCTGGGACA GCTGTTCGAG CACCGCCCCC CCTCCCCTCC CCTCTTCCCC
  Y
  TCCCCCCTCC CCATTTCACA CCCGCTCCAT CTATAGTGGA AGACTAAAAA GCCAAAACAA
  AACAAAAAGA AAAAAAAAAA AAACCACTGC AGCACTGCAT AGCTGGAAGG GGTGGGGCTG
  ACATCTCCTT AGTCCTCCCA CCCCTCAGCC AAGCCCCACC ACAGGGCTAG TGTTCACACT
  AGGTGCCATG CATTGGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628331	MGP_WTSI_16_22894150	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263692416					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628331	MGP_WTSI_16_22894150	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22712827 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Rr513336	regulatory region 513336	within coordinates
Rr513337	regulatory region 513337	254 bp proximal
Tssr4818	transcription start site region 4818	1253 bp downstream
Tssr4819	transcription start site region 4819	1254 bp upstream
Tssr4820	transcription start site region 4820	1870 bp upstream
Tssr137558	transcription start site region 137558	1496 bp downstream
Tssr137559	transcription start site region 137559	1300 bp downstream
Tssr137560	transcription start site region 137560	1257 bp downstream
Tssr137561	transcription start site region 137561	1232 bp downstream
Tssr137562	transcription start site region 137562	906 bp downstream
Tssr137563	transcription start site region 137563	152 bp upstream
Tssr137564	transcription start site region 137564	171 bp upstream
Tssr137565	transcription start site region 137565	236 bp upstream
Tssr137566	transcription start site region 137566	335 bp upstream
Tssr137567	transcription start site region 137567	700 bp upstream
Tssr137568	transcription start site region 137568	719 bp upstream
Tssr137569	transcription start site region 137569	750 bp upstream
Tssr137570	transcription start site region 137570	765 bp upstream
Tssr137571	transcription start site region 137571	1099 bp upstream
Tssr137572	transcription start site region 137572	1122 bp upstream
Tssr137573	transcription start site region 137573	1216 bp upstream
Tssr137574	transcription start site region 137574	1237 bp upstream
Tssr137575	transcription start site region 137575	1243 bp upstream
Tssr137576	transcription start site region 137576	1923 bp upstream
Tssr140501	transcription start site region 140501	1928 bp upstream
Tssr140502	transcription start site region 140502	1782 bp upstream
Tssr140503	transcription start site region 140503	1744 bp upstream
Tssr140504	transcription start site region 140504	273 bp downstream
Tssr140505	transcription start site region 140505	346 bp downstream
Tssr140506	transcription start site region 140506	753 bp downstream
Tssr140507	transcription start site region 140507	1136 bp downstream
Tssr140508	transcription start site region 140508	1180 bp downstream
Tssr140509	transcription start site region 140509	1199 bp downstream
Tssr140510	transcription start site region 140510	1214 bp downstream
Tssr140511	transcription start site region 140511	1257 bp downstream