rs263697662 SNP Detail

Summary

• ID
  rs263697662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAACTGAG CTGTGGTCCC CTCCACAATG GCACAGCCTC
  TGAGGTCCAA TAAGACACTA GGGAGGGAAC CTGGGTGGTG GGGGAGGGTT CAGTGGAGAT
  R
  GTTCTCATTA TGACATCGGG ATGAAGAGGC ACTTCTTGGA GATTGTCCAC CATAGTCAGA
  CCTAAGTATC TGTACCTCTG CCTCAATATG AAGAAAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320196688	CHEV_1_193802104	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263697662					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710184 () rs orientation: forward

Symbol	Name	Function Class
Gm70525	predicted gene, 70525	1882 bp downstream
Gm70534	predicted gene, 70534	39 bp upstream
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	840 bp distal
Rr426277	regulatory region 426277	658 bp distal
Rr426278	regulatory region 426278	1064 bp proximal
Tssr10797	transcription start site region 10797	834 bp downstream
Tssr10798	transcription start site region 10798	823 bp downstream
Tssr10799	transcription start site region 10799	778 bp downstream
Tssr10800	transcription start site region 10800	24 bp upstream
Tssr10801	transcription start site region 10801	61 bp upstream