rs263722838 SNP Detail

Summary

• ID
  rs263722838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80564649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGTAGCA TCTTGGGAAG
  TTCTATGAGG CAAGAAGACA CTGGTGCTTT GGACTCAAAC TACTAAATAC AAAGCCCGGT
  TTTTTGTTTG TTTGTATTGA TTCTTTTTTT TTTTTTTTTT TTTTTTTTTT TGAGATAGGG
  TCTATTTATG TAGCCTTGGC TGTCCTAGAA TGTGCTATGA AAACCAGACT GGCTTCAAAC
  Y
  TGTAGCAATC TGGCTGCCTC TGCCTCCCTA AAGCTGGGGT TCAAGGCAGC CCTCTTCTGC
  TGTTCAATTG TGTGGTGTTG GCTGAAGTGT CTCCCTCTGC TTTTGCTCTT TCTTTAAAAC
  TGGAATAATA ACAGCACGTT TTTTGGGATT ATTGTGAGAA CAGTTTCAGT AGGTATGGAG
  GTGACAAGTG AGTGCCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323024888	CHEV_9_80576203	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263722838					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80564649 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	348 bp distal
Rr683773	regulatory region 683773	404 bp proximal
Tssr86335	transcription start site region 86335	683 bp downstream