rs263728928 SNP Detail

Summary

• ID
  rs263728928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57813774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA GGTTGGTGCG GGGCAAGCCA
  R
  TGAAGTGCTG AAGCTGTATG GGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319735616	CHEV_1_57831459	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263728928					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57813774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	within coordinates
Rr411358	regulatory region 411358	within coordinates
Rr411359	regulatory region 411359	54 bp distal
Rr411360	regulatory region 411360	211 bp proximal
Rr411361	regulatory region 411361	257 bp proximal
Rr411362	regulatory region 411362	626 bp proximal
Rr411363	regulatory region 411363	766 bp proximal
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6747	transcription start site region 6747	133 bp upstream
Tssr6748	transcription start site region 6748	227 bp upstream
Tssr6749	transcription start site region 6749	318 bp upstream