rs263773656 SNP Detail

Summary

• ID
  rs263773656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25095665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGCGGGC AACCCAAGGC
  GTGGGCGGGG ACCGACTTGG GGGCGTAGCC GCGCTTGGTA GCCGTTTGGA GAAGCCCCGC
  CTTTTCCTCC GCCCCCTCAC GTGGTCGTCC CTGTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TCCCCCCCAG ACAGGGTCCT AGGCTGTAGT TGAGGGTGGC CTTGGCCTCT CAGCAAACTA
  Y
  CTTCCAGTCT CACATCCGCG CTCCCTCCTA GTTCTTACTG CTCTGCTTCA TGAGGTGTCT
  CTCCCTCTGC CCTGCCTTAT TCCCCAGAAT CAAAGGAAAG GGGAAGACAG CAACACCGCC
  GGCCTCAGGG TTGATCTACA GAAAGGAGCG TAAGTCGAGG GAGCCCACGT GCCCCGGAAA
  AGGCGGGAAA CAGAGGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370804887	MGP_WTSI_7_26181259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263773656					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370804887	MGP_WTSI_7_26181259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25095665 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cpgi18601	CpG island 18601	435 bp distal
Cpgi18602	CpG island 18602	within coordinates
Cpgi18603	CpG island 18603	502 bp proximal
Lipe	lipase, hormone sensitive	within coordinates
Rr167273	regulatory region 167273	within coordinates
Rr400174	regulatory region 400174	363 bp downstream
Rr400175	regulatory region 400175	19 bp downstream
Tssr65124	transcription start site region 65124	1933 bp downstream
Tssr65125	transcription start site region 65125	47 bp downstream
Tssr65126	transcription start site region 65126	206 bp upstream
Tssr71238	transcription start site region 71238	702 bp upstream
Tssr71239	transcription start site region 71239	653 bp upstream
Tssr71240	transcription start site region 71240	545 bp upstream