rs263787457 SNP Detail

Summary

• ID
  rs263787457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28591508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGGAC ACCGTGCTGG
  CACATGAGCC CAGGCCAAGG AGCCTGAGTC TACTGAGCAA GCTCCTTTGG AAAGTGTTAA
  TGGAGGGGAG ACCAAGGAGT GGCCAGCCAC AAATAAAACA GCAAATCTGG GGGCACGAGA
  GGGGTGATAT ATGATCCTGG CCTGCTTTCT TGTTGGATTG GTGGGGCGAT AACCAGAATA
  Y
  TTTATCTTAT TATCATTTAT TTTCAAATAA TCTTAGACTT GGGAAGTTAT AAAAATGGCG
  TTCACCTCTT GTCTAGCTTA GGCCGTGTAA CCTTGGTCTT CTCAAAGCCG TGAAGCAGAA
  GTGGGTGCAG TGCTTGAGCC TCCACTGCAG GCTTCTCCTG GATCTCACCC CCTTTCACCT
  GCTCTTGGGT TTCTGTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353481853	MGP_WTSI_2_28557016	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263787457					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481853	MGP_WTSI_2_28557016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28591508 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ak8	adenylate kinase 8			Intron
				Noncoding-Transcript-Variant
Cpgi11391	CpG island 11391			1120 bp distal
Gm75616	predicted gene, 75616			1 bp downstream
Rr553885	regulatory region 553885			1856 bp distal
Rr553887	regulatory region 553887			1322 bp distal
Rr553888	regulatory region 553888			85 bp proximal
Spaca9	sperm acrosome associated 9			1845 bp upstream
Tssr16969	transcription start site region 16969			1678 bp downstream
Tssr16970	transcription start site region 16970			1342 bp downstream
Tssr16971	transcription start site region 16971			1309 bp downstream
Tssr16972	transcription start site region 16972			1171 bp upstream
Tssr23291	transcription start site region 23291			1837 bp upstream
Tssr23292	transcription start site region 23292			1808 bp upstream
Tssr23293	transcription start site region 23293			1757 bp upstream