rs263787594 SNP Detail

Summary

• ID
  rs263787594
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32385403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTCACG GCCCGCCCGG
  GATAGGGGAG GCGCTTTTGT GCAAGGGGTC CTAGGCCTTG GGGGGTCCTT GAGCCCCCAT
  CCTAACCTTC CCAGGACTCC AGGCAGAAGT AGGATGGGGT GAGCCTGAAA CTTTTGGTAC
  ACCTCGCTTC CGAATTTCAG CCCCAGATTC CCACAACTCC AGCTCCTACT CTTGGACTCT
  W
  GATTCATTCA AGGGTCTCGA TTCCTTGGGC CTCTAGGATC CTGCCTTCCC ATCATGAATC
  TGTGCGAACC CCATGACTGA TACACACCCC CAGCTGCTGC ATCTCTGCCC CGGCTTTAAT
  CCTGGGGGGG CAGGTCCTCT AAATTCCAAA CTTAGGAGAA TATATATATA TATATATATA
  CTTTTTTTTT TTTGCTTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325361634	CHEV_17_32303374	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263787594					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32385403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8964	CpG island 8964	169 bp distal
Cpgi8965	CpG island 8965	201 bp proximal
Notch3	notch 3	within coordinates
Rr339597	regulatory region 339597	within coordinates
Rr370218	regulatory region 370218	1886 bp downstream
Tssr147343	transcription start site region 147343	1414 bp upstream
Tssr147344	transcription start site region 147344	319 bp downstream
Tssr147345	transcription start site region 147345	450 bp downstream