rs263788646 SNP Detail

Summary

• ID
  rs263788646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10183130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTGGGG ATCACACTTA
  AGACTTCATG CATGCTAGGC AAATGTTCTA CCACAAAGCC TGCCACGTCC CTACTTTTAA
  GATGTGATGT AGAGCTAGGA GATGGCTCAT GGGCAAAGGG TTTGGTGTGC AAGCCTGATA
  GCCTGAGTTG GATCCTAGAA CCCACATTAC TTTTTAAAAT CCAGGTGTGG CCAGGCGATG
  R
  TGGTGCATGA CTTTAATCCC AGCATTCAGA AGGCAGAGGC CGTCAGATCT CTGTGAGTTT
  GGGGCTAACC TGGTCTATAG AGTGAGTTCT AGGACAGTCA AAGCTACCCA GAGAAACCCC
  GTCTCAAAAC CAAACAAACA AAAGCCAGAT GTGGTAACCC CAGAACTCAC ACACCGCAAG
  ATGGAAAATG GACACAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401724656	MGP_WTSI_19_10280256	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263788646					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401724656	MGP_WTSI_19_10280256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10183130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1293 bp distal
Fen1	flap structure specific endonuclease 1	1597 bp upstream
Rr356596	regulatory region 356596	671 bp proximal
Rr361277	regulatory region 361277	1715 bp proximal
Rr362959	regulatory region 362959	329 bp distal
Rr405855	regulatory region 405855	1411 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155037	transcription start site region 155037	1575 bp downstream
Tssr155038	transcription start site region 155038	1529 bp downstream
Tssr155039	transcription start site region 155039	1517 bp downstream
Tssr155040	transcription start site region 155040	694 bp upstream
Tssr158165	transcription start site region 158165	1896 bp upstream
Tssr158166	transcription start site region 158166	1818 bp upstream
Tssr158167	transcription start site region 158167	1353 bp upstream