rs263792906 SNP Detail

Summary

• ID
  rs263792906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45203684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTCCGA TGGGAGCCCT
  AGTCGGTCTG AGAGCTGGCT TGGCACTGGT GGTTCTAAGT CTGGAGCCTT TCTAACAGCA
  TGGCACTGCA TTGCTCTACA AAAAAAAAAA AAATCAAGTC CTACAACAGA CCCGAGGCAC
  TCGACTTCCT CTTGGAATGC AAACACCGAG GACCTGGGAC AACAGCAAAA AGTCAAATCC
  Y
  TCACAGGCTC GTGTCTGGTC TTTTGCTCTC CTTAGGTCCT ATGGAGAATG GCCTTTTCCC
  TCCTGCTTTT CTTTCACATC AGATTCAAGT AGACCAGGGA AACACGTTCA GGGTTCTGTA
  TAATTTCTTT AGAGCTCTGA ATAAAAGAAA GAGAAGTGTG TCAACATTGG ACATTTCTAA
  TTTCTCAACA TACTTTAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166166	CHEV_16_45383434	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263792906					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45203684 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr4884	transcription start site region 4884	628 bp upstream
Tssr4885	transcription start site region 4885	583 bp upstream
Tssr4886	transcription start site region 4886	253 bp upstream
Tssr141220	transcription start site region 141220	712 bp upstream
Tssr141221	transcription start site region 141221	688 bp upstream
Tssr141222	transcription start site region 141222	568 bp upstream
Tssr141223	transcription start site region 141223	554 bp upstream
Tssr141224	transcription start site region 141224	531 bp upstream
Tssr141225	transcription start site region 141225	475 bp upstream
Tssr141226	transcription start site region 141226	439 bp upstream
Tssr141227	transcription start site region 141227	404 bp upstream
Tssr141228	transcription start site region 141228	363 bp upstream
Tssr141229	transcription start site region 141229	347 bp upstream
Tssr141230	transcription start site region 141230	195 bp upstream
Tssr141231	transcription start site region 141231	94 bp upstream
Tssr141232	transcription start site region 141232	52 bp upstream