rs263802873 SNP Detail

Summary

• ID
  rs263802873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31149497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGCACAG GTGCGGCCGC
  AGGTCGCGAG GGGACGCGAG GGGCGTGCGG CCTCTGGGGG CGCTGAGGCG GCGGCGGCGG
  GGGTGATGGG GAGGGCACAG AGCCCGGGGG TCTGCCCGGG CGCGGAGGGC CTGAGTGGGG
  CGTCCGGGAT GCGTGGGGGT CCCGGGCGGG GTCGCGGGCA CAGGGCGCGC GGCGGGGGTC
  Y
  CACGGGTGTA CAGGCCTCGC GGATTCTGGG ACGGGTCAGC TGGGAGGGGA TGGCGGTGCA
  CTTGACCCGA GCCGCCGGGA CCCAGGAGAC CTGGACCCTG GTCATCGCCG CCATCCCCCG
  GCCGTCTGCG CTCGGCGGGG ATGCCCCGGG CTGGCCCCAG CTCTAAGCGT CCGGCGACGC
  GGGCTTCCGG GCTTGGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433265	MGP_WTSI_3_30994270	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263802873					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433265	MGP_WTSI_3_30994270	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31149497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	1347 bp downstream
Rr397631	regulatory region 397631	1531 bp downstream
Rr574879	regulatory region 574879	1441 bp distal
Rr574880	regulatory region 574880	1050 bp distal
Rr574881	regulatory region 574881	213 bp distal
Rr574882	regulatory region 574882	within coordinates
Rr574883	regulatory region 574883	160 bp distal
Rr574884	regulatory region 574884	483 bp proximal
Skil	SKI-like	within coordinates
Tssr28706	transcription start site region 28706	1441 bp downstream
Tssr28707	transcription start site region 28707	1298 bp downstream
Tssr28708	transcription start site region 28708	660 bp downstream
Tssr28709	transcription start site region 28709	636 bp downstream
Tssr28710	transcription start site region 28710	619 bp downstream
Tssr28711	transcription start site region 28711	400 bp downstream
Tssr28712	transcription start site region 28712	372 bp downstream
Tssr28713	transcription start site region 28713	225 bp downstream
Tssr28714	transcription start site region 28714	549 bp upstream
Tssr28715	transcription start site region 28715	1026 bp upstream
Tssr28716	transcription start site region 28716	1492 bp upstream
Tssr32911	transcription start site region 32911	479 bp downstream