rs263804064 SNP Detail

Summary

• ID
  rs263804064
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80702398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGGGGG AGGGGGATCT
  GTGTCTTCTG TCTCTAGTCT TCAGAATTCA GTGTTTGCTG TAAGCAGATG GTCAATCTGT
  GCTCCCCGAG TGACCATCAA GAGAGTTTGA ATTCTGGGAG ACATAAACAT CACACATAGA
  CTAAGTACTG TGGCGAGCCA GCCTGGGGTC CTACAGACTG CTGAGGCATA GCACTCCTTT
  S
  TGTAGGTAAA GAAACTAAAC CCAGGGAGGG GAGGAAACTT TTTCAAAGGT ATGCCTATGG
  GAGGTCTGCC CTGAAAGGAT GCTGTGAAGA CCACTTCTCT GAGAGGCTCT GGCCTGAGTT
  TAACACAGCT TGATAGGCTG CGTCACGCTG CAGGAAGTAA TGGCTCACGT TCAGGATGGT
  GGTCCCAAAG GATTGCATCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323762499	CHEV_11_80625074	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263804064					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80702398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3390	CpG island 3390	761 bp distal
Gm31228	predicted gene, 31228	within coordinates
Rr247320	regulatory region 247320	within coordinates
Tmem98	transmembrane protein 98	within coordinates
Tssr103551	transcription start site region 103551	1168 bp downstream