rs263808596 SNP Detail

Summary

• ID
  rs263808596
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACTCTCC AGCGGGGGCC
  GCGGGATTCA CCGCGCCCAC GCGGCCACTG AGGAGGGAAT CCTCCCCCGC CAACCCGGTG
  TGATTCGGGG TCGCGCCTCC GTGCTCCCTC CCTCTCCTCC CCCTCGCTCT CAGCCAGGCT
  GCGCGCTTCA GGAGCAGGCC TCGGGGAACA CATCACCCAC CCCCGGGATC CGCTGTCGAG
  K
  TGACAGCACC CTGGGTCGGC ACAGGGGGCC GCCCTTGACT GCAAGGCACC CTCAGGCAGC
  AATGAGGACA ACCCTGCGGG AGACAGAGAG TAGAGACTGG AGGAGACCGC CTTGGTGGCT
  TAGAATCTGT GGGTTTCACA TCTTCCCGCA GTAACTCAGC CGCAAGCCCT TCGCCGGCTG
  CAGTAGATAG CGACTGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391459029	MGP_WTSI_14_70475580	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263808596					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391459029	MGP_WTSI_14_70475580	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	within coordinates
Cpgi6681	CpG island 6681	839 bp proximal
Egr3	early growth response 3	1544 bp upstream
Gm63137	predicted gene, 63137	47 bp downstream
Rr404186	regulatory region 404186	967 bp upstream
Rr494833	regulatory region 494833	655 bp distal
Rr494834	regulatory region 494834	915 bp distal
Rr494835	regulatory region 494835	61 bp distal
Rr494836	regulatory region 494836	940 bp proximal
Tssr126385	transcription start site region 126385	606 bp downstream
Tssr126386	transcription start site region 126386	574 bp downstream
Tssr126387	transcription start site region 126387	1134 bp upstream
Tssr126388	transcription start site region 126388	1153 bp upstream
Tssr126389	transcription start site region 126389	1395 bp upstream
Tssr126390	transcription start site region 126390	1433 bp upstream
Tssr126391	transcription start site region 126391	1533 bp upstream
Tssr126392	transcription start site region 126392	1602 bp upstream