rs263809936 SNP Detail

Summary

• ID
  rs263809936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178166056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTTTTC CACCATTTAA
  CTGCGTTTTT AAATTTTACA AGTCCTGCCT TGCCAGTCGG ACTTATTTTA AGTTCCGCAA
  GGGCGAGGCC AGAGCCTTTC TTTTGTCTCT TCCCCAACCA GTGGTGCAAG GTTTGGGAAA
  GAGGCTTGCT GTACTCCACC ATGCCTAACA GCCATATAGA GCGGGCCTTG TGTTGCTACT
  Y
  ACCGTATTTT CTATTGACCT TTGAGTAAGC CTTAGATTTT CATGGAAGTT CCCCTCGTTG
  TACTATAAAG ATAGGCCTCT GTCCCCTGCA AATCTGATCC ACCAGTTTGG AGACCCTTTA
  ATTACAGATG AGGAAGACAG CCAGCACCCA GCTAGATTAT GCACTTTGAT CCTCTCCCTG
  TTTTTTCAGC CACTCTAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535486	MGP_WTSI_1_180268622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263809936					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535486	MGP_WTSI_1_180268622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178166056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	407 bp distal
Gm38300	predicted gene, 38300	1110 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	694 bp upstream
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	1404 bp upstream
Tssr317	transcription start site region 317	900 bp upstream
Tssr318	transcription start site region 318	675 bp upstream
Tssr10387	transcription start site region 10387	1313 bp downstream
Tssr10388	transcription start site region 10388	1175 bp downstream
Tssr10389	transcription start site region 10389	589 bp downstream
Tssr10390	transcription start site region 10390	504 bp downstream
Tssr10391	transcription start site region 10391	293 bp downstream
Tssr15484	transcription start site region 15484	1373 bp upstream
Tssr15485	transcription start site region 15485	1319 bp upstream
Tssr15486	transcription start site region 15486	1238 bp upstream
Tssr15487	transcription start site region 15487	1172 bp upstream
Tssr15488	transcription start site region 15488	839 bp upstream
Tssr15489	transcription start site region 15489	797 bp upstream
Tssr15490	transcription start site region 15490	758 bp upstream
Tssr15491	transcription start site region 15491	730 bp upstream
Tssr15492	transcription start site region 15492	697 bp upstream