rs263809946 SNP Detail

Summary

• ID
  rs263809946
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAGATTT TTTTTTTCTA
  TTAAGGCTTT CTAGTTTAAG GCAACGGGCA GCTGAATATC AAGGAACTTA CACAATGAAA
  GGAGAGGTTG CTTAAATGGA AGCAGGCCGA GTTTGAGATC CATTTAAACA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACAGAAT TAAGTTTATT
  S
  CATATCTCCA ACTTTTCTTC TTCCAAAAGC GACTAAAAGT GCATTTTGTA GAGTTGCTCT
  TCACAGCAAT GCTGTCACAA CATGGGGACT CTCATAATAC TGTTTATAGG TCAAAACCAA
  AACCAAAACC AAAACGAAAC CAAAGGCGTT TTTCTCCAAC TCATTAAAGA GGCGGCCCTT
  CCTTTTTAAT ATATTCACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498344	MGP_WTSI_10_13684007	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263809946					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498344	MGP_WTSI_10_13684007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839945 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1573 bp upstream
Cpgi1318	CpG island 1318	342 bp proximal
Gm56954	predicted gene, 56954	within coordinates
Gm66890	predicted gene, 66890	419 bp upstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	1874 bp upstream
Rr384171	regulatory region 384171	within coordinates
Rr427854	regulatory region 427854	within coordinates
Rr427855	regulatory region 427855	430 bp proximal
Rr427856	regulatory region 427856	1531 bp proximal
Tssr3141	transcription start site region 3141	1910 bp upstream
Tssr92402	transcription start site region 92402	425 bp upstream
Tssr92403	transcription start site region 92403	595 bp upstream
Tssr92404	transcription start site region 92404	626 bp upstream
Tssr92405	transcription start site region 92405	648 bp upstream
Tssr92406	transcription start site region 92406	813 bp upstream
Tssr92407	transcription start site region 92407	1038 bp upstream
Tssr92408	transcription start site region 92408	1057 bp upstream
Tssr92409	transcription start site region 92409	1089 bp upstream
Tssr92410	transcription start site region 92410	1127 bp upstream
Tssr92411	transcription start site region 92411	1578 bp upstream
Tssr92412	transcription start site region 92412	1650 bp upstream
Tssr92413	transcription start site region 92413	1682 bp upstream
Tssr92414	transcription start site region 92414	1892 bp upstream
Tssr92415	transcription start site region 92415	1973 bp upstream
Tssr96784	transcription start site region 96784	1443 bp downstream
Tssr96785	transcription start site region 96785	1461 bp downstream