rs263823938 SNP Detail

Summary

• ID
  rs263823938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGTCAACC AAAATACAAT TGGATAACAC
  TGcagctcac cccagctcac cccagctcac TTCTCACTTT GTGTTCCCAT CCTTTTAAAA
  TGTTGTACAG TATCCTTCCT GGGACATGTT TCAGGTCCTG AACTGGCTGC CTTCCTGAGC
  R
  CTCAGAGAAT AAAGCTTTCA TTTTTAAGCT TCCTGAGTCT GAAATAAGTT TTCTCGGCTT
  GTACCTCGAA CCCAACAGTA AGAATCCAGC CCAGTTCCAG CGGCAGAAAA AGCAAAGTCA
  AGGCAGTGGC TCTGATGTAT TCCTCTACCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104740	CHEV_12_77354974	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263823938					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	900 bp proximal
Gm47525	predicted gene, 47525	188 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1311 bp upstream
Rr403350	regulatory region 403350	1058 bp upstream
Rr468112	regulatory region 468112	821 bp proximal
Rr468113	regulatory region 468113	1740 bp proximal
Tssr113934	transcription start site region 113934	1222 bp upstream
Tssr113935	transcription start site region 113935	1257 bp upstream
Tssr113936	transcription start site region 113936	1303 bp upstream
Tssr113937	transcription start site region 113937	1345 bp upstream
Tssr113938	transcription start site region 113938	1361 bp upstream
Tssr113939	transcription start site region 113939	1384 bp upstream
Tssr113940	transcription start site region 113940	1466 bp upstream
Tssr113941	transcription start site region 113941	1496 bp upstream
Tssr116711	transcription start site region 116711	1059 bp downstream
Tssr116712	transcription start site region 116712	1085 bp downstream