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rs263835650 SNP Detail
Summary
  • ID
    rs263835650
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:87844236 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTGCAGAAA AGAAAAAGAA
TCATTTAGTT TTAGTGAATA CATAGTATTT TTCAATATAC AATGATAATT AAGGTATTTA
GTAAGTTATA TTAGCAGGTT ATTAATATAA TATATAATGG GACATTTGAT GAAACTTACA
TTTAAATTAT TTAAAACACA TTGTATAAGC CTACTGTTTA CAAGAAAAGT GAGTGCAGTC
M
AGAGAGAAAA AGAAATTAGT GAGCAGAGTA TACAAAGAGA CATCTAAACA ATGCTAATTC
TTTCTCTGTC TACAGGTGAA CTTTAAATTC CATTCTTAAA TCAAAACACA CAAACATAAT
GGAAAATACA GACTAATGGC AATATATTAC AGTAGTCACT ATGAGTTTGC TTGCTACTAT
GCTAGGCTTC AAATAAGCCA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365777316 MGP_WTSI_5_88125402 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C A C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263835650 SNP C C C C C C C C C C C C C C C C C C A C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365777316 MGP_WTSI_5_88125402 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:87844236 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Csn2 casein beta within coordinates
Tssr1529 transcription start site region 1529 1816 bp downstream
Tssr46883 transcription start site region 46883 1866 bp downstream
Tssr46884 transcription start site region 46884 1851 bp downstream
Tssr46885 transcription start site region 46885 1830 bp downstream
Tssr46886 transcription start site region 46886 1800 bp downstream
Tssr46887 transcription start site region 46887 1783 bp downstream
Tssr46888 transcription start site region 46888 1677 bp downstream
Tssr46889 transcription start site region 46889 1658 bp downstream
Tssr46890 transcription start site region 46890 1625 bp downstream
Tssr46891 transcription start site region 46891 1612 bp downstream
Tssr46892 transcription start site region 46892 1583 bp downstream
Tssr46893 transcription start site region 46893 1557 bp downstream
Tssr46894 transcription start site region 46894 1512 bp downstream
Tssr46895 transcription start site region 46895 1492 bp downstream
Tssr46896 transcription start site region 46896 1413 bp downstream
Tssr51618 transcription start site region 51618 1837 bp upstream
Tssr51619 transcription start site region 51619 1803 bp upstream
Tssr51620 transcription start site region 51620 1793 bp upstream
Tssr51621 transcription start site region 51621 1774 bp upstream
Tssr51622 transcription start site region 51622 1738 bp upstream
Tssr51623 transcription start site region 51623 1722 bp upstream
Tssr51624 transcription start site region 51624 1705 bp upstream
Tssr51625 transcription start site region 51625 1695 bp upstream
Tssr51626 transcription start site region 51626 1683 bp upstream
Tssr51627 transcription start site region 51627 1657 bp upstream
Tssr51628 transcription start site region 51628 1547 bp upstream
Tssr51629 transcription start site region 51629 1453 bp upstream
Tssr51630 transcription start site region 51630 1405 bp upstream
Tssr51631 transcription start site region 51631 1366 bp upstream
Tssr51632 transcription start site region 51632 1107 bp upstream
Tssr51633 transcription start site region 51633 303 bp upstream
Tssr51634 transcription start site region 51634 198 bp upstream
Tssr51635 transcription start site region 51635 762 bp downstream
Tssr51636 transcription start site region 51636 788 bp downstream
Tssr51637 transcription start site region 51637 901 bp downstream
Tssr51638 transcription start site region 51638 1677 bp downstream
Tssr51639 transcription start site region 51639 1684 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory