rs263837193 SNP Detail

Summary

• ID
  rs263837193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71147218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCTTG GGCTGGTGAG
  ATGGCTCAGT GGGTTAGAGC ACCCGACTGC TCTTCCGAAG GTCCAGAGTT CAAATCCCAG
  CAACCACATG GTGGCTCACA ACCATCCGTA ACAAGATCTG ACTCCCTCTT CTGGAGTGTC
  TGAAGACAGC TACAGTGTAC TTACATATAA TAAATAAATC TTTAAAAAAA AAAAAAAAAA
  R
  AACCTTACTA CAGAAAATTA GCTTATGATA AAATACTTCA TTTATTCACT CTTTTATGTT
  TTGTCTTTTG TGAGACAGGG GCTCATTAAC CCAGGCTACC TTCACACTAT CTAGCTGAGA
  CTGCTCTAGA CTCCTGATGA AGGTGTGCCC CATACTTAGG AAGATTGCTG CTCCCTTCGG
  GCTGGTGAGA TGGCAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	SPRET/EiJ
ss375104763	MGP_WTSI_8_73218467	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	SPRET/EiJ
rs263837193					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104763	MGP_WTSI_8_73218467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71147218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	854 bp proximal
Cpgi20486	CpG island 20486	1971 bp proximal
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	974 bp upstream
Rr400910	regulatory region 400910	711 bp upstream
Rr664886	regulatory region 664886	1923 bp distal
Rr664887	regulatory region 664887	484 bp distal
Rr664888	regulatory region 664888	488 bp proximal