rs263839042 SNP Detail

Summary

• ID
  rs263839042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115049471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGATCT GAAAGAGAAG
  ATAGAAGATG CTGGAGGCCC TTGTGCGGAG GATCAGGTAC TACTGTTGGA TGATGAGGAG
  TTGGAAGATG ATGAGAGCCT TAAAGAGCTT GAGATCAAAG ACTGCGACAC CATCATACTC
  ATTAGGGTAA TCGACTAGTC TGGCTGCTTG AGTCCGTGCC TAGAGTCTTA CGCCTCCCTA
  Y
  CTCATCCCTA GACTCTGATG GGTTCTTTCT ATAGCTTAAA TATCAACATT CCCTTCTCTT
  GCTTAAAACC CTCTCCTATA GCCGGGCAGT GGTGGTGCAT GCCTTTATCT CAGCACTTAG
  AGAATTTCTG AGTTCAAGGC CAGCCTGGTC TATAGAGTGA GTTACAGAAC AGCCAGAGCT
  ATACGGAGAA ACCCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366345381	MGP_WTSI_5_115361419	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263839042					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366345381	MGP_WTSI_5_115361419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115049471 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	916 bp distal
Tssr48138	transcription start site region 48138	1501 bp downstream
Tssr48139	transcription start site region 48139	388 bp downstream
Tssr48140	transcription start site region 48140	354 bp downstream
Tssr48141	transcription start site region 48141	137 bp downstream
Tssr48142	transcription start site region 48142	47 bp downstream
Tssr48143	transcription start site region 48143	4 bp downstream
Tssr48144	transcription start site region 48144	25 bp upstream
Tssr48145	transcription start site region 48145	81 bp upstream
Tssr48146	transcription start site region 48146	130 bp upstream
Tssr48147	transcription start site region 48147	172 bp upstream
Tssr48148	transcription start site region 48148	234 bp upstream
Tssr48149	transcription start site region 48149	261 bp upstream
Tssr48150	transcription start site region 48150	272 bp upstream
Tssr48151	transcription start site region 48151	290 bp upstream
Tssr48152	transcription start site region 48152	372 bp upstream
Tssr48153	transcription start site region 48153	462 bp upstream
Tssr48154	transcription start site region 48154	474 bp upstream
Tssr52739	transcription start site region 52739	407 bp upstream