rs263854948 SNP Detail

Summary

• ID
  rs263854948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101168076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCACCC CCCTCCCCGG
  CCTACCAAGT TTCTTGCTTC CCTTACTGAC CCCTCCTCCT CCCTCCTTTG TGTCTCCTCC
  CTCTCCAGAG ATGCCCTGTA TTCAAGCTCA ATATGGAACA CCAGCAACGA GCCCAGGACC
  GCGTGACCAC CTGACCGGTG ATCCCCTGGC CCTTGAGTTC GGCAAGCCTA CCATGGACCT
  R
  GCCAGCCCCG AGACAGCACC TGCCGCACCT GCTACACTGC CCAGCTTCAG CACCTTCATG
  GACGGGTACA CCGGAGAGTT TGACACCTTC CTCTACCAGC TGCCGGGGAC GACCCAGCCG
  TGCTCCTCAG CTTGTTCCTC TGCCTCCTCC ACGTCTTCTT CCTCATCCTC GGCCACCTCC
  CCCGCTTCGG CGTCCTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192989	MGP_WTSI_15_101100626	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263854948					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192989	MGP_WTSI_15_101100626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101168076 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr510002	regulatory region 510002	1623 bp distal
Tssr133222	transcription start site region 133222	779 bp downstream
Tssr133223	transcription start site region 133223	89 bp downstream
Tssr133224	transcription start site region 133224	71 bp downstream
Tssr133225	transcription start site region 133225	55 bp downstream
Tssr133226	transcription start site region 133226	37 bp downstream
Tssr133227	transcription start site region 133227	24 bp downstream
Tssr133228	transcription start site region 133228	8 bp downstream
Tssr133229	transcription start site region 133229	within coordinates
Tssr133230	transcription start site region 133230	71 bp upstream
Tssr133231	transcription start site region 133231	103 bp upstream
Tssr133232	transcription start site region 133232	122 bp upstream
Tssr133233	transcription start site region 133233	150 bp upstream
Tssr133234	transcription start site region 133234	168 bp upstream
Tssr133235	transcription start site region 133235	201 bp upstream
Tssr133236	transcription start site region 133236	250 bp upstream
Tssr133237	transcription start site region 133237	272 bp upstream
Tssr133238	transcription start site region 133238	305 bp upstream
Tssr133239	transcription start site region 133239	347 bp upstream
Tssr133240	transcription start site region 133240	439 bp upstream
Tssr133241	transcription start site region 133241	456 bp upstream
Tssr133242	transcription start site region 133242	464 bp upstream
Tssr133243	transcription start site region 133243	490 bp upstream
Tssr133244	transcription start site region 133244	511 bp upstream
Tssr133245	transcription start site region 133245	555 bp upstream
Tssr133246	transcription start site region 133246	580 bp upstream
Tssr133247	transcription start site region 133247	668 bp upstream
Tssr133248	transcription start site region 133248	688 bp upstream
Tssr133249	transcription start site region 133249	1539 bp upstream
Tssr133250	transcription start site region 133250	1573 bp upstream
Tssr133251	transcription start site region 133251	1604 bp upstream
Tssr133252	transcription start site region 133252	1951 bp upstream
Tssr133253	transcription start site region 133253	1962 bp upstream
Tssr133254	transcription start site region 133254	1982 bp upstream
Tssr136545	transcription start site region 136545	104 bp downstream
Tssr136546	transcription start site region 136546	226 bp downstream
Tssr136547	transcription start site region 136547	302 bp downstream
Tssr136548	transcription start site region 136548	312 bp downstream
Tssr136549	transcription start site region 136549	346 bp downstream
Tssr136550	transcription start site region 136550	452 bp downstream
Tssr136551	transcription start site region 136551	528 bp downstream