rs263873019 SNP Detail

Summary

• ID
  rs263873019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:112425594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGTTCTGAT GGTAAACGAT GAGACAGGCT
  ACCATGGATT TCAGCACCTC TTCTGTGTTT GATCAGCACA AAGGTAACAC GATGTTTTAC
  CACTCCAATG GCGAAGAGAT TTCCAGTTTG TAAGGAGAAG AGGAAAGgtg tgtgtgtgtg
  W
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgAAAAC
  AAACCTGGTA AGGACTTGAT AAGCTTTTAG GAAAAGAAAA GAAAAAAAAA GCTTACGGGC
  TTTCTGTCTT GCGGATGTAT TCCTAGTCCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324528918	CHEV_13_113079268	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263873019					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112425594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd55	ankyrin repeat domain 55			Intron
				Noncoding-Transcript-Variant
Rr486330	regulatory region 486330			230 bp distal
Rr486331	regulatory region 486331			within coordinates
Tssr121099	transcription start site region 121099			553 bp downstream
Tssr121100	transcription start site region 121100			512 bp downstream
Tssr121101	transcription start site region 121101			466 bp downstream
Tssr121102	transcription start site region 121102			254 bp downstream
Tssr124046	transcription start site region 124046			88 bp downstream