rs263880368 SNP Detail

Summary

• ID
  rs263880368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108531789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACACA GAGAAACCTT
  GTTTTGAAAA GAGAAAGTAA AAAGAGCTTC CTACACTACT AACTCTGCGA AGCATCATGA
  GTTACCTCTG GCCTTCTGAA TAAAACTAAA ACATTGGTTC ATGAGGTTTG AGCCTGCTGG
  CTTTCAATAT CAAACCAATA CCTCCAGCTT GCTGCCTGAA GATCATAAAA CACTCATTTC
  Y
  TTTATAAAAA CAAACGTATT TTGAAGATTT TATTTTCTTA ATTGTGTATG CATGTGTCTG
  TGACTGGGTA TGTATGTACA TGTGAGTGCA ATGCCTGTGG AGGCCAGAAG AGGACATAGG
  TTTCTCTGGA ACTAGAGTTG TGTGTAGCTG TGAGCCACCA ACCAACCCTT CCCCTTGCTG
  GAACCTCAAT GCAGATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388611	CHEV_7_116076096	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263880368					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108531789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	1684 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	153 bp proximal
Eif3f	eukaryotic translation initiation factor 3, subunit F	1833 bp upstream
Rr400539	regulatory region 400539	1575 bp upstream
Rr652951	regulatory region 652951	100 bp proximal
Rr652952	regulatory region 652952	1345 bp proximal
Rr652953	regulatory region 652953	1565 bp proximal
Tssr68456	transcription start site region 68456	1823 bp upstream
Tssr68457	transcription start site region 68457	1935 bp upstream