rs263884985 SNP Detail

Summary

• ID
  rs263884985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCTGAC TTCCACAATG
  CTCATAAAAA GCTGGGCATC GTGGTATATG CTTTAATCTC ACTCAGCTCT GGCGAGGAAG
  ACAGCTAGAT CATTGGGGCT TGCTGGCTAG CCAGCCTTGT CTACTTAATC CAGTTCTAGG
  CCAGTGAGAG ACACTGTCTC AAAACCAAAA CAAAACAAAA CAAGGTGTGA CAGGTCCTGA
  R
  GAACATCTGA AGTTGACCAC CAAAGGAATA ATGCTTGTGC ACATATGTGA GCCCACACAG
  ACACACCCAG GAGGGTCTCC GGGAAGCCAT AAATGTGTGC ATTATTCTAC TTTCCCAAAC
  ATGTTATTAC TAAGAGCCAG CAGAAATGAT GACATAGCAC ACAGCCAAGT TAAGTTTATC
  ATTGACTTTT ATTAACAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351391132	MGP_WTSI_1_130484606	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263884985					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351391132	MGP_WTSI_1_130484606	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515766 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	170 bp downstream
Rr12058	regulatory region 12058	166 bp distal
Rr28453	regulatory region 28453	834 bp proximal
Tssr195	transcription start site region 195	1088 bp upstream
Tssr13461	transcription start site region 13461	389 bp downstream
Tssr13462	transcription start site region 13462	575 bp downstream
Tssr13463	transcription start site region 13463	671 bp downstream
Tssr13464	transcription start site region 13464	728 bp downstream
Tssr13465	transcription start site region 13465	746 bp downstream
Tssr13466	transcription start site region 13466	811 bp downstream
Tssr13467	transcription start site region 13467	858 bp downstream
Tssr13468	transcription start site region 13468	947 bp downstream
Tssr13469	transcription start site region 13469	1000 bp downstream
Tssr13470	transcription start site region 13470	1095 bp downstream
Tssr13471	transcription start site region 13471	1164 bp downstream
Tssr13472	transcription start site region 13472	1233 bp downstream
Tssr13473	transcription start site region 13473	1246 bp downstream
Tssr13474	transcription start site region 13474	1302 bp downstream
Tssr13475	transcription start site region 13475	1326 bp downstream
Tssr13476	transcription start site region 13476	1343 bp downstream
Tssr13477	transcription start site region 13477	1404 bp downstream