rs263889054 SNP Detail

Summary

• ID
  rs263889054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTATTA TTATTATTAT
  AACCTACATT TTGCAGTAAG TTTACCAACT GGATTTTCTT TCCTAAACAG ATTACTACTG
  GATTGACCCT AACCAAGGAT GTACTATGGA TGCCATCAAA GTGTACTGTG ATTTCTCTAC
  TGGTGAAACC TGCATCCAGG CCCAACCTGT AAACACCCCA GCGAAGAACT CATACAGCCG
  Y
  GCCCAGGCCA ACAAGCATGT CTGGTTAGGA GAGACTATCA ATGGTGGCAG CCAGGTACGT
  AATTCTCCAA GTATTCCTCA TCTTCCAAAA TATGATTTTC TTAGCATCAT TTGCTTTTTA
  ATTACTTGGG CTTTAACCCT TTACCCTCAT GAGCTTATTA AAAGAAACTA CTCTTTTCAC
  AAATTCCAAT TCTATCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230131	MGP_WTSI_6_4488756	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263889054					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230131	MGP_WTSI_6_4488756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538756 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	776 bp downstream
Tssr1770	transcription start site region 1770	88 bp downstream
Tssr54726	transcription start site region 54726	958 bp downstream
Tssr54727	transcription start site region 54727	877 bp downstream
Tssr54728	transcription start site region 54728	800 bp downstream
Tssr54729	transcription start site region 54729	746 bp downstream
Tssr54730	transcription start site region 54730	111 bp downstream
Tssr54731	transcription start site region 54731	66 bp downstream
Tssr54732	transcription start site region 54732	within coordinates
Tssr54733	transcription start site region 54733	711 bp upstream
Tssr54734	transcription start site region 54734	722 bp upstream
Tssr54735	transcription start site region 54735	736 bp upstream
Tssr54736	transcription start site region 54736	760 bp upstream
Tssr54737	transcription start site region 54737	782 bp upstream
Tssr54738	transcription start site region 54738	820 bp upstream
Tssr54739	transcription start site region 54739	835 bp upstream
Tssr54740	transcription start site region 54740	899 bp upstream
Tssr54741	transcription start site region 54741	1250 bp upstream
Tssr54742	transcription start site region 54742	1772 bp upstream
Tssr54743	transcription start site region 54743	1787 bp upstream
Tssr54744	transcription start site region 54744	1818 bp upstream
Tssr54745	transcription start site region 54745	1830 bp upstream
Tssr54746	transcription start site region 54746	1843 bp upstream
Tssr54747	transcription start site region 54747	1874 bp upstream
Tssr54748	transcription start site region 54748	1918 bp upstream
Tssr59718	transcription start site region 59718	1965 bp downstream