rs263895495 SNP Detail

Summary

• ID
  rs263895495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTGTGA GCGTCTGTCT
  CAGATAAACA GCTTCAAGAC AAAGAGGCTG TGGAGGAACC TCATCTGTAG ATGCTTGCCC
  AGCATGTGGG AATCGTCAGG TCCCATCCTT AGCTGTGTGC GTGTTTGTGA TAGGTATGCT
  AGTGACCACA CACAAAAGCT CCCAGACAGT ACAACCAGAT CCACTTTTAT TAGGAACAAA
  Y
  ACAATCTCAA TCAGTACAAG TAGGCTTCAA GAGTTGATAT TAATGGAAAT CATCCAAATT
  ACACTTGGGT CACAAATAAT TACCCCACAT AAAAAGGGAA AAAAAAAATC TCATTCAGGG
  AAGGGAAAGG TTTCCTGCAA TGGTTTTCAT GGCAGTGGGT AGGTAGTCTT GCACTTTGAC
  TGGTCATATC TGTCAGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552065	MGP_WTSI_19_44468981	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263895495					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552065	MGP_WTSI_19_44468981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382930 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	23 bp distal
Rr548237	regulatory region 548237	171 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1868 bp downstream
Tssr156606	transcription start site region 156606	1917 bp upstream
Tssr159446	transcription start site region 159446	91 bp downstream
Tssr159447	transcription start site region 159447	268 bp downstream
Tssr159448	transcription start site region 159448	300 bp downstream
Tssr159449	transcription start site region 159449	352 bp downstream
Tssr159450	transcription start site region 159450	379 bp downstream
Tssr159451	transcription start site region 159451	451 bp downstream
Tssr159452	transcription start site region 159452	741 bp downstream
Tssr159453	transcription start site region 159453	800 bp downstream
Tssr159454	transcription start site region 159454	832 bp downstream
Tssr159455	transcription start site region 159455	1125 bp downstream
Tssr159456	transcription start site region 159456	1247 bp downstream
Tssr159457	transcription start site region 159457	1291 bp downstream
Tssr159458	transcription start site region 159458	1321 bp downstream
Tssr159459	transcription start site region 159459	1411 bp downstream
Tssr159460	transcription start site region 159460	1448 bp downstream
Tssr159461	transcription start site region 159461	1507 bp downstream
Tssr159462	transcription start site region 159462	1535 bp downstream
Tssr159463	transcription start site region 159463	1581 bp downstream
Tssr159464	transcription start site region 159464	1604 bp downstream
Tssr159465	transcription start site region 159465	1628 bp downstream
Tssr159466	transcription start site region 159466	1649 bp downstream
Tssr159467	transcription start site region 159467	1702 bp downstream
Tssr159468	transcription start site region 159468	1950 bp downstream