rs263901005 SNP Detail

Summary

• ID
  rs263901005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97875098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACATCT TCTCTCGCTC
  TAATGGGGAA AATACTTTCT CCTCTTTCTT TCTTCTAAGG CCCAAAGGGA CACCGGCGGA
  GGATGCCAAG AAGGAGCTAA AGAATCGGAG GAGAGAGAAG AGCACTCAGG AGGGACCAGC
  TGAGCCTAGA CCACCGGGCA CTCACGTGGA AGCCACCGTT CATGGTCTCT CCAAACCAGA
  Y
  GTGTTTCTTT TCCTTGCTCT TGCTGCTCCA CCAGTTTTTC CGAGGGACAG TCGCTGGGTT
  GGGGTAGACG CAAGTCTCGC CGGTCTCCAT GTTGCAGAAA ACTTTCATGG CGTCCAAGGT
  GCAGCCCTGG TTGGGATCAA TCCAGTAGTC TCCTGCAGGA AAAAGAGGCA GCATCCCATG
  ATGCTTTGCA AGACAGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395125779	MGP_WTSI_15_97807648	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263901005					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395125779	MGP_WTSI_15_97807648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97875098 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			385 bp distal
Tssr4707	transcription start site region 4707			322 bp upstream
Tssr4708	transcription start site region 4708			1995 bp upstream
Tssr132910	transcription start site region 132910			1587 bp downstream
Tssr136189	transcription start site region 136189			1530 bp upstream
Tssr136190	transcription start site region 136190			1500 bp upstream
Tssr136191	transcription start site region 136191			1296 bp upstream
Tssr136192	transcription start site region 136192			1166 bp upstream
Tssr136193	transcription start site region 136193			1149 bp upstream
Tssr136194	transcription start site region 136194			1098 bp upstream
Tssr136195	transcription start site region 136195			1075 bp upstream
Tssr136196	transcription start site region 136196			1063 bp upstream
Tssr136197	transcription start site region 136197			1045 bp upstream
Tssr136198	transcription start site region 136198			521 bp upstream
Tssr136199	transcription start site region 136199			482 bp upstream
Tssr136200	transcription start site region 136200			457 bp upstream
Tssr136201	transcription start site region 136201			401 bp upstream
Tssr136202	transcription start site region 136202			339 bp upstream
Tssr136203	transcription start site region 136203			60 bp downstream
Tssr136204	transcription start site region 136204			153 bp downstream
Tssr136205	transcription start site region 136205			616 bp downstream
Tssr136206	transcription start site region 136206			655 bp downstream
Tssr136207	transcription start site region 136207			685 bp downstream