rs263902140 SNP Detail

Summary

• ID
  rs263902140
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77281921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAGGCA ATTTTACAAA
  GCAATCTAAT TTCTATCAGT ATAGCAGGAA GGTAATACTA CATGAAAAAA GAATCTACTA
  CGTGGGATAG GAGACATTTA GAACAACAAA ATGAAGAAAT TAAACAATTA TTAATCATTT
  TCAAAAACAT AATTCCAATA TCTAAAATAT TCACATATTT CCTGGAATAT TCTAAAGAGT
  W
  TTATTACTTT CCTATTGATA AAAGTTTCTA TTTTTCTCTC TCAAAACAGA TTTGGATCAA
  TTATTGAAAA TTTTCATGCA TATTATTAAA ATAATATATT TTAAATTTCA AAATAATCTT
  GTTGGAATCG CTTAAAAAGA ACAGGTGATG TTCGACTTAA GTTCTGAAAG TATTCAGTCT
  CCTTTAGCCT TATGATTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss389135963	MGP_WTSI_13_77273063	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs263902140					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389135963	MGP_WTSI_13_77273063	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77281921 () rs orientation: forward

Symbol	Name	Function Class
2210408I21Rik	RIKEN cDNA 2210408I21 gene	1738 bp upstream
Cpgi5881	CpG island 5881	1187 bp proximal
Rr281682	regulatory region 281682	479 bp proximal
Rr284991	regulatory region 284991	1321 bp distal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr120442	transcription start site region 120442	1262 bp upstream
Tssr120443	transcription start site region 120443	1711 bp upstream
Tssr123276	transcription start site region 123276	1614 bp downstream
Tssr123277	transcription start site region 123277	1695 bp downstream