rs263925447 SNP Detail

Summary

• ID
  rs263925447
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAAAAT GAGCCCATCC
  AATGGGATTC TGCTCCGGTG TTTGAGGAAC CAGCTCATTC TGTGTCTGAT TCCCTATCTA
  GACATTGTGA CCTTAGAAGG TACAATCATT TCCTCACAGC TGATCTTATC TCTTACACTC
  AAAGGTGCAG CCCTTAGAGA CCAGGATGTC CTTTTGCTCA TGACAATTAC TGACAGTTTG
  W
  CGTTGCCACC ACTATGTAAA CCCAGGTCTG TACCTGTCTC TCTATTTACA TATGGGAGCA
  GAGCTGTCTC TTCATCAGAC ACAGCCCTGG AGGGACCAGG GGGAGCAAGC AGCTTTCCCT
  GCATAAAGTA AGTTTGAGAT CTTTGCAGCC CCATGTGGCC ACATTGATGC AGGAGCAGCC
  CAGATGAGCC TGGAGTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817659	CHEV_11_94939231	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263925447					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	632 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	1116 bp upstream
Tssr3652	transcription start site region 3652	1301 bp upstream
Tssr104346	transcription start site region 104346	966 bp downstream
Tssr110254	transcription start site region 110254	1328 bp upstream
Tssr110255	transcription start site region 110255	1262 bp upstream
Tssr110256	transcription start site region 110256	1195 bp upstream
Tssr110257	transcription start site region 110257	1099 bp upstream