rs263927306 SNP Detail

Summary

• ID
  rs263927306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31275240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGTGGAA ATGGGGGAAG
  GGGTGGGGAT GGGGTTGAGT AGAAGGGGCT TGAGAAAGAG AGAAATGCCA GAAGAAAATT
  CTGAAAGTAG GGAGAACAGA CAGAGGGTAG ATATCTGCAA AACCAGGCAT GCTGATACCA
  TGGCCTGTGT CCTGGTCACA TTATTCAGTG TCTCCCCTTG TCCATTCTTG CTGCTTTACA
  R
  CATGGTTGGG CACCAGGGCA GACAGTAGCC CAGGCCCCAG AAACCTTTCT CACTCCCTGG
  GAGGTTTGTA CTCTTTTTTT TTTTAATCTG AATTTTATTT TTATTTTTTT TCTATCCTTT
  TTTTTTCCAT TTTTTATTAG GTATTTAGCT CATTTACATT TCCAATGCTA TACCAAAAGT
  CCCCCATACC CACCCACCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398001278	MGP_WTSI_17_31193211	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263927306					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398001278	MGP_WTSI_17_31193211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31275240 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	1428 bp upstream
Cpgi8940	CpG island 8940	999 bp proximal
Rr525355	regulatory region 525355	931 bp proximal
Rr525356	regulatory region 525356	1472 bp proximal
Rr525357	regulatory region 525357	1797 bp proximal
Rr525358	regulatory region 525358	1997 bp proximal
Tssr143637	transcription start site region 143637	1420 bp upstream
Tssr143638	transcription start site region 143638	1438 bp upstream
Tssr143639	transcription start site region 143639	1453 bp upstream
Tssr143640	transcription start site region 143640	1474 bp upstream
Tssr143641	transcription start site region 143641	1502 bp upstream