rs263930058 SNP Detail

Summary

• ID
  rs263930058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTCTTA GCAGAGAATT
  TTTGCAATCC CACCCCAACA ACTTCCTACA AAGGCTTGCT TTTCATCCGA CTTCCTACAT
  TCCCACCCAG CACTGGTATC AAACATACTA TACCCATACT GGTTTGTTTA CTCTGCATAG
  GTGCTATGTA TAAAACATCT TAGCTATGGT TTTAATGTTA AATTACAGGC AAGGGGAAAA
  W
  TGATGGCCTT TTCTGGTGCA ACCCACAGGA CCTTGGCACC ATGGTTACCT TGAAACCGAT
  ATGCAACGTG ACCTCAAGGA TCCAGCTACT GGCTGCATCA AGGTGAGGGG TGAAGGGTCT
  GTGATTAGGC CAAAGGCCCA TGGTGGCGAT GTGGCAGAGA AATCACTTGT GGGGAGACCT
  TGTAACAGGA TTCTGGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662561	MGP_WTSI_19_5796340	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263930058					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662561	MGP_WTSI_19_5796340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846368 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	359 bp upstream
Rr543160	regulatory region 543160	1922 bp distal
Rr543161	regulatory region 543161	1114 bp proximal
Tssr5415	transcription start site region 5415	494 bp downstream
Tssr5416	transcription start site region 5416	970 bp downstream
Tssr157645	transcription start site region 157645	13 bp downstream
Tssr157646	transcription start site region 157646	43 bp downstream
Tssr157647	transcription start site region 157647	205 bp downstream
Tssr157648	transcription start site region 157648	371 bp downstream
Tssr157649	transcription start site region 157649	471 bp downstream
Tssr157650	transcription start site region 157650	530 bp downstream
Tssr157651	transcription start site region 157651	584 bp downstream
Tssr157652	transcription start site region 157652	721 bp downstream
Tssr157653	transcription start site region 157653	838 bp downstream
Tssr157654	transcription start site region 157654	881 bp downstream
Tssr157655	transcription start site region 157655	918 bp downstream
Tssr157656	transcription start site region 157656	948 bp downstream
Tssr157657	transcription start site region 157657	1070 bp downstream
Tssr157658	transcription start site region 157658	1122 bp downstream
Tssr157659	transcription start site region 157659	1225 bp downstream
Tssr157660	transcription start site region 157660	1378 bp downstream
Tssr157661	transcription start site region 157661	1399 bp downstream
Tssr157662	transcription start site region 157662	1504 bp downstream
Tssr157663	transcription start site region 157663	1563 bp downstream
Tssr157664	transcription start site region 157664	1685 bp downstream
Tssr157665	transcription start site region 157665	1692 bp downstream
Tssr157666	transcription start site region 157666	1717 bp downstream
Tssr157667	transcription start site region 157667	1970 bp downstream