rs263932747 SNP Detail

Summary

• ID
  rs263932747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158226120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACATTT GCTTTTTCTT
  AAAAAAGATT TATTTATTTA TTTATTATCT GTAAGTACAC TGTAGCTGTC TTCAGACACC
  CCAGAAATGG ACATCAGGTC CCATTATAGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA
  TTTGAACTCC GGACCTTCAG AAGAGCAGTC AGTGCTCTTA ATCTCTGAGC CATCTCTCCA
  K
  CCCCCAGGAG AGTCTTCTTG AACTCAAAAT TCAAATTGCC CTAAAATGTA AAGATCCCAA
  ATCTTACATA AATAGCCTTA GGTTTAAATC TTTCAAAGTT AATGTGAATT AAGTAGGATT
  TGCTTGTGGT TTAGTTTTGT GCCTGCCCTT GGTCTGACGT AAAGGAGCAG ACAAGGGAAG
  AAGTTAGGGG AGGCTCAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281285	MGP_WTSI_2_158209936	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263932747					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281285	MGP_WTSI_2_158209936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158226120 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21319	transcription start site region 21319	1612 bp downstream
Tssr21320	transcription start site region 21320	1576 bp downstream
Tssr21321	transcription start site region 21321	1466 bp downstream
Tssr21322	transcription start site region 21322	1343 bp downstream
Tssr21323	transcription start site region 21323	1299 bp downstream
Tssr21324	transcription start site region 21324	1261 bp downstream
Tssr21325	transcription start site region 21325	1225 bp downstream
Tssr21326	transcription start site region 21326	1201 bp downstream
Tssr21327	transcription start site region 21327	1164 bp downstream
Tssr21328	transcription start site region 21328	1118 bp downstream
Tssr21329	transcription start site region 21329	1105 bp downstream
Tssr21330	transcription start site region 21330	1016 bp downstream
Tssr21331	transcription start site region 21331	506 bp downstream
Tssr21332	transcription start site region 21332	371 bp downstream
Tssr21333	transcription start site region 21333	341 bp downstream
Tssr21334	transcription start site region 21334	417 bp upstream
Tssr21335	transcription start site region 21335	773 bp upstream
Tssr21336	transcription start site region 21336	827 bp upstream
Tssr21337	transcription start site region 21337	931 bp upstream
Tssr21338	transcription start site region 21338	1498 bp upstream
Tssr27228	transcription start site region 27228	982 bp upstream