TGAAATCAGC CCTGCTTGGG AATGGTGCAA GACAGGAGAT GCCAGGGAAG GGCCACTAGT GGACAACCAA CGATTGCCAC ACACCTGCCC AGCTGTTTCC CTTCCAGACC TCAGGGCCTT GGTGGCCACC CCTCTTTTGG TGGTTTGTTT GTTTTTTCTA AATGAGTTCT GGATCATCCA GGTTGGGATC AATAGTGGGG R AAATACACTT TTGTGCTTCT GCTGTGAGTA ATAAGCCAAA AGACCCCATT TGGGCTCAGT TTATTAGCAC AACCATGGGA TTTGATTGTC TCCTTGTTTC AGTCTCCCTA GCATTAAAAT GCTTATGCAG TAAGGTGGTC CCAGAGGGTG ACGGAAGGCG GGACGACTTG GAGGAGGGTC TCAGGTGCTG CCAGGACTCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss353515389 | MGP_WTSI_2_30270070 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs263934435 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss353515389 | MGP_WTSI_2_30270070 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr2:30304562 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11436 | CpG island 11436 | 541 bp proximal | ||||||
Crat | carnitine acetyltransferase | within coordinates | ||||||
Gm16323 | predicted gene 16323 | within coordinates | ||||||
Ptpa | protein phosphatase 2 protein activator | 1500 bp upstream | ||||||
Rr554310 | regulatory region 554310 | 824 bp distal | ||||||
Rr554311 | regulatory region 554311 | 162 bp distal | ||||||
Rr554312 | regulatory region 554312 | 134 bp proximal | ||||||
Rr554313 | regulatory region 554313 | 964 bp proximal | ||||||
Rr554314 | regulatory region 554314 | 1603 bp proximal | ||||||
Tssr17115 | transcription start site region 17115 | 1068 bp upstream | ||||||
Tssr17116 | transcription start site region 17116 | 1481 bp upstream | ||||||
Tssr17117 | transcription start site region 17117 | 1530 bp upstream | ||||||
Tssr17118 | transcription start site region 17118 | 1546 bp upstream | ||||||
Tssr17119 | transcription start site region 17119 | 1637 bp upstream | ||||||
Tssr23368 | transcription start site region 23368 | 1251 bp upstream | ||||||
Tssr23369 | transcription start site region 23369 | 432 bp upstream | ||||||
Tssr23370 | transcription start site region 23370 | 370 bp upstream | ||||||
Tssr23371 | transcription start site region 23371 | 752 bp downstream | ||||||
Tssr23372 | transcription start site region 23372 | 839 bp downstream | ||||||
Tssr23373 | transcription start site region 23373 | 868 bp downstream | ||||||
Tssr23374 | transcription start site region 23374 | 888 bp downstream | ||||||
Tssr23375 | transcription start site region 23375 | 910 bp downstream | ||||||
Tssr23376 | transcription start site region 23376 | 959 bp downstream | ||||||
Tssr23377 | transcription start site region 23377 | 1022 bp downstream | ||||||
Tssr23378 | transcription start site region 23378 | 1064 bp downstream | ||||||
Tssr23379 | transcription start site region 23379 | 1084 bp downstream | ||||||
Tssr23380 | transcription start site region 23380 | 1217 bp downstream | ||||||
Tssr23381 | transcription start site region 23381 | 1453 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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