rs263941458 SNP Detail

Summary

• ID
  rs263941458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64994491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAAAGTG AGTTCCAGGA
  CAGCCAGGGC TATACAGAGA AACCCTGTCT CGAAAAACCA AAAAAAAAAA ACAAAACAAA
  CAAAAACAAA CAAACAAACA AACAAAAAAA AGAACTCCCC CCTCCACGCC TTCCCGAACA
  CTTGACAATT ATTCATCTGC TTTTCAGTAG TGGAATATTT TAATTTGATA TACTCATCAA
  R
  CACTTATTCT AGGTACTGTT CCAGGGGCTT TAAAAACATC AAGTGGCACA TGCCTTTAAT
  TCCAGCAGAG GCAGGTGGAT CTCTGTGAAT TCAAGACCAG CCTAATCTAC ATAGCAATTT
  CCAGGCTAAA CAGGGTTACA TAGAGAGACT CTCTCAAAAA AAACATACAT ATTTAATAAC
  TCATTGAATC TTTGATGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349895475	MGP_WTSI_1_65001906	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263941458					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349895475	MGP_WTSI_1_65001906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64994491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1093 bp proximal
Gm51627	predicted gene, 51627	1170 bp upstream
Plekhm3	pleckstrin homology domain containing, family M, member 3	within coordinates
Rr412356	regulatory region 412356	906 bp proximal
Rr412357	regulatory region 412357	1181 bp proximal
Rr412358	regulatory region 412358	1413 bp proximal
Rr412359	regulatory region 412359	1482 bp proximal
Tssr11945	transcription start site region 11945	1379 bp downstream
Tssr11946	transcription start site region 11946	1399 bp downstream
Tssr11947	transcription start site region 11947	1475 bp downstream
Tssr11948	transcription start site region 11948	1491 bp downstream