rs263942052 SNP Detail

Summary

• ID
  rs263942052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117430686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACATCCA CTGCTCCTGT
  AGTGGTAAGG AAGAGACCTG GCAAACGCCC TTGCCTGGGA CCTGAAGGGC CAGTTGTTTG
  ACCTCAGTGA AGAGTTGAAA CGCTATCGGG AGAAGACTCA AACGCTGGAA CGGGAGAACC
  GGGGGCTTCG GAAACATCTC AGAGAGGTCC AGGAGCAGGC CACGACCCTG GGGACAGAGC
  R
  GAGCACCCTG GAAGGGGAGC TGGCCAATGT ACGCACCCGA GCTGAGCAGG ACCAGCAGAG
  ACTGGAGATG CTGAGTGCCT GTGTCTTGGA GCTGGAGGAA TATCTGGGTA CCACGGAAAG
  GTTGGTTCAG GAGCTTCAGA GAGAGCGGCT GCAATTGAAG GAGGAGTGGA GCACATTGAG
  CATCCAACTG GAGGAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498000	CHEV_10_117031837	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263942052					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117430686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	463 bp distal
Gm63651	predicted gene, 63651	within coordinates
Kifc5c-ps	kinesin family member C5C, pseudogene	within coordinates
Rr402265	regulatory region 402265	1040 bp upstream
Rr439564	regulatory region 439564	903 bp proximal