rs263943373 SNP Detail

Summary

• ID
  rs263943373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46923548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCCAGG ATATTGCGGA
  AGTCCTGTAT TCCTAGCCAA GGACTGTGGC GAAACTTGGT GTGGGGACCG TGGTGAAACT
  GGATTAAAGG GGTTCGTGTA TATCTGTGCT AAAGAAAGAT GGGACTTCTT CAGCTACCGT
  GGTCCCTCCA AGCAGAGAAG CAAGCAGAGA GGCTATGCCA AGGTGTCAGC TGTGGAAGAA
  Y
  GTTAAGGATG GAAGAGCTAA AGGGCACCTG CAACATTCCA TAGCATCACA TTATCAGGGT
  TCAGGAGACT TCCAGATTTA CCCTTTGCCC TACCTCAGAT TCGTTGTGAA ACTAGAGGGC
  AGTTTGGGTG ACCTTAGTGG CTTTTGCTTG CTGACAGCCA TGCTCATGGA CCTGAGGGAG
  GCCACGCCCA CCTTGCGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374534969	MGP_WTSI_8_47555865	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263943373					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534969	MGP_WTSI_8_47555865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46923548 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	666 bp upstream
Cpgi20317	CpG island 20317	117 bp proximal
Gm45244	predicted gene 45244	880 bp downstream
Gm64268	predicted gene, 64268	within coordinates
Rr186591	regulatory region 186591	within coordinates
Rr191786	regulatory region 191786	1651 bp distal
Rr368530	regulatory region 368530	45 bp upstream
Tssr2561	transcription start site region 2561	1200 bp upstream
Tssr77199	transcription start site region 77199	537 bp upstream
Tssr77200	transcription start site region 77200	570 bp upstream
Tssr77201	transcription start site region 77201	658 bp upstream
Tssr77202	transcription start site region 77202	1182 bp upstream
Tssr77203	transcription start site region 77203	1208 bp upstream
Tssr77204	transcription start site region 77204	1376 bp upstream
Tssr77205	transcription start site region 77205	1425 bp upstream
Tssr77206	transcription start site region 77206	1849 bp upstream
Tssr77207	transcription start site region 77207	1886 bp upstream
Tssr81204	transcription start site region 81204	1095 bp downstream
Tssr81205	transcription start site region 81205	1128 bp downstream
Tssr81206	transcription start site region 81206	1916 bp downstream