rs263950956 SNP Detail

Summary

• ID
  rs263950956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82422506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCACTTT TAAAACAAAC
  GTGTCCTAAA AGTCCTAAAA ATTCACCACA AACACTTCAA CTTCTTGTCA GCGTAAAAGA
  TCGCCTCTGA AGTGAGGTCT TTAAAAACCC GAAATGTGGG TCACTGTAGA ACAGGACTTT
  AGGCACCCCA AAACGCAAAG TAATAAGTCC TCTGGACCAC CACCTAGACT GGCGGCGTCA
  Y
  CCGCCCACTG TGGGCAGCAG AGTCCAAAGG CGCTCAAGCC TAGTTCTCAG CCCCTTGCCC
  AAGAGTCCAT CTACAGACGC TCCCAAGCCG GAGTCCGCCC CACGCGCACC GGCCAGGGAG
  TGAGGGTGCC GCCGCGGCCA CCACCGCCGC CGCTGCCTTC GCCGCAATCT CCTTAGGGGC
  GGACAGGGGC TCACGGCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190655	MGP_WTSI_4_82150173	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263950956					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190655	MGP_WTSI_4_82150173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82422506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14398	CpG island 14398			within coordinates
Gm57123	predicted gene, 57123			1514 bp downstream
Nfib	nuclear factor I/B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr594356	regulatory region 594356			1123 bp distal
Rr594357	regulatory region 594357			within coordinates
Rr594358	regulatory region 594358			1029 bp proximal
Tssr37680	transcription start site region 37680			1654 bp upstream
Tssr42247	transcription start site region 42247			626 bp downstream
Tssr42248	transcription start site region 42248			953 bp downstream
Tssr42249	transcription start site region 42249			975 bp downstream
Tssr42250	transcription start site region 42250			1005 bp downstream
Tssr42251	transcription start site region 42251			1101 bp downstream
Tssr42252	transcription start site region 42252			1327 bp downstream
Tssr42253	transcription start site region 42253			1410 bp downstream
Tssr42254	transcription start site region 42254			1449 bp downstream
Tssr42255	transcription start site region 42255			1480 bp downstream
Tssr42256	transcription start site region 42256			1534 bp downstream
Tssr42257	transcription start site region 42257			1564 bp downstream
Tssr42258	transcription start site region 42258			1589 bp downstream