rs263956384 SNP Detail

Summary

• ID
  rs263956384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81910635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGCTGG CTCTCTAGGT
  AAAGGTGCAT GCTGCCAAGC CTGACGGCCT GAGTTCTCCT CCTGGGACCC CTGTAGTGGA
  GGGAAAGGGC CAACTTCTCA AGCTGCCCTC TGCCCTCCCA CACCCGCGCT GTGGATGTGC
  ACCCTCCCCC CAGATAAATA AGTGCTTTTG TTTTTCCAGA CAGGGTTTCT CTGTGTAGCT
  Y
  CGGGTGTCCT GGAACTTGCT CTGTAGAACA GGCTGGCCCT GAAATCAGAC CTGCCTCTGC
  CTCCACCCAA GTGCTGGGAT TAAAGGCGTA GACTACCATG CCTAGCTTTA ATTGATTTTT
  TTAATAGCAT GAGGTGAATA ATAATAATAA TAATAATAGA TTTTTTTTTA AGATTTGTTT
  ATTATATGTA AGTACACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033182	CHEV_15_81856864	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263956384					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81910635 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	1208 bp proximal
Tssr132336	transcription start site region 132336	1591 bp upstream
Tssr132337	transcription start site region 132337	1620 bp upstream
Tssr132338	transcription start site region 132338	1655 bp upstream
Tssr132339	transcription start site region 132339	1677 bp upstream
Tssr135523	transcription start site region 135523	1415 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates