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rs263957743 SNP Detail
Summary
  • ID
    rs263957743
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr16:22712109 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACCTGCCTC TGCCTCCTGG
CTCCTGGAAT CATAGGCATG TGTCACCGAC TATTTGTCTG CTTTTAACAT GCAAAGTTGG
AAACTCCATA CGGTTCAGCT TAACATAAAG ATGAGAAGAA CAAGTTTGTG TCACTAGAGA
CTTAGGATTT AGGAGGAAAA TAAGGTAAAC ACCAGGATGC TCAGAGTGAG GATTGACAAC
Y
AGCTTTACAA TGGGACAGCT GATTTGAAAC CACGGTTTTC CTGGGTGAGT TTTAAGGGCA
GTTGGCAAAA GACGTAATGG CCGGCTCTCT GCCTAGTTTA CATGCTGAAG GGAAAGCCGT
GAGCGAGCAC TGTGCATGTG CTACGTGCTG ATTGTGAGAT GCTCATTATG GGATGCCCGA
GTGGATCAAG AAGTCCCTGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395628314 MGP_WTSI_16_22893432 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263957743 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395628314 MGP_WTSI_16_22893432 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:22712109 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ahsg alpha-2-HS-glycoprotein within coordinates
Gm30505 predicted gene, 30505 within coordinates
Tssr4818 transcription start site region 4818 535 bp downstream
Tssr4819 transcription start site region 4819 1972 bp upstream
Tssr137556 transcription start site region 137556 1964 bp downstream
Tssr137557 transcription start site region 137557 1308 bp downstream
Tssr137558 transcription start site region 137558 778 bp downstream
Tssr137559 transcription start site region 137559 582 bp downstream
Tssr137560 transcription start site region 137560 539 bp downstream
Tssr137561 transcription start site region 137561 514 bp downstream
Tssr137562 transcription start site region 137562 188 bp downstream
Tssr137563 transcription start site region 137563 870 bp upstream
Tssr137564 transcription start site region 137564 889 bp upstream
Tssr137565 transcription start site region 137565 954 bp upstream
Tssr137566 transcription start site region 137566 1053 bp upstream
Tssr137567 transcription start site region 137567 1418 bp upstream
Tssr137568 transcription start site region 137568 1437 bp upstream
Tssr137569 transcription start site region 137569 1468 bp upstream
Tssr137570 transcription start site region 137570 1483 bp upstream
Tssr137571 transcription start site region 137571 1817 bp upstream
Tssr137572 transcription start site region 137572 1840 bp upstream
Tssr137573 transcription start site region 137573 1934 bp upstream
Tssr137574 transcription start site region 137574 1955 bp upstream
Tssr137575 transcription start site region 137575 1961 bp upstream
Tssr140501 transcription start site region 140501 1210 bp upstream
Tssr140502 transcription start site region 140502 1064 bp upstream
Tssr140503 transcription start site region 140503 1026 bp upstream
Tssr140504 transcription start site region 140504 991 bp downstream
Tssr140505 transcription start site region 140505 1064 bp downstream
Tssr140506 transcription start site region 140506 1471 bp downstream
Tssr140507 transcription start site region 140507 1854 bp downstream
Tssr140508 transcription start site region 140508 1898 bp downstream
Tssr140509 transcription start site region 140509 1917 bp downstream
Tssr140510 transcription start site region 140510 1932 bp downstream
Tssr140511 transcription start site region 140511 1975 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory