rs263961894 SNP Detail

Summary

• ID
  rs263961894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCCTCT CCCCACACCT
  CTCCATTGTC TTCCCTCTCC ATTGGCTTCA CTATGGCGGC CAGACCCAGC CACCACTCAG
  AGATTAGGCG ACTCTTCCCT CAAGCCCAGA TTCAGACCGT GCCTAACGCT GGCCACTGGG
  TCCACAGCGA CAAACCCCAA GACTTCATGG ATGCTGTCAC CAGCTTCTTG GCTTAAGAAG
  K
  AGCTCCTTGG AAGAGCAGCC AGGGGACTCT AGGCTTGGGA TCTGTGCCAT CTTGCTTCTG
  CACAGAAAAA CTCAGGGGCA CGGAGAGGGT CCAGGAGTAC AGAAGTGGCC CAACACTTTT
  AATGAATAAA GACAGTTCCC CTTTAAGCCC TGGATCCGTT TTCACCACCG TCGCCCCCAC
  TGACCCCGGG AGAGTTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824596	MGP_WTSI_5_135487894	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263961894					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824596	MGP_WTSI_5_135487894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040878 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd11	abhydrolase domain containing 11			mRNA-UTR
				Noncoding-Transcript-Variant
Abhd11os	abhydrolase domain containing 11, opposite strand			162 bp downstream
Cpgi16736	CpG island 16736			1850 bp distal
Gm43372	predicted gene 43372			1916 bp upstream
Gm73578	predicted gene, 73578			within coordinates
Rr622228	regulatory region 622228			886 bp proximal
Rr622229	regulatory region 622229			889 bp proximal
Rr622230	regulatory region 622230			1164 bp proximal
Rr622231	regulatory region 622231			1265 bp proximal
Rr622232	regulatory region 622232			1392 bp proximal
Rr622233	regulatory region 622233			1516 bp proximal
Tssr1661	transcription start site region 1661			1992 bp downstream
Tssr1662	transcription start site region 1662			703 bp downstream
Tssr1663	transcription start site region 1663			1135 bp downstream
Tssr1664	transcription start site region 1664			1153 bp downstream
Tssr53717	transcription start site region 53717			722 bp downstream
Tssr53718	transcription start site region 53718			738 bp downstream
Tssr53719	transcription start site region 53719			788 bp downstream
Tssr53720	transcription start site region 53720			833 bp downstream
Tssr53721	transcription start site region 53721			1090 bp downstream
Tssr53722	transcription start site region 53722			1107 bp downstream