rs263971246 SNP Detail

Summary

• ID
  rs263971246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23805730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTCATT CCCATGGTCT
  CTAAGGGTCA CTTGTGGGAT ATGAACTTAC CCACCACCAC CACACATACA GGAGATTATG
  TACAGACCTT CAGATAGCTA AGCTAGAGTT AACACCATTG CGCACACCCA CATATCCCCA
  GCCTCCTCTG CTAAGCTCAG CCCACTAAGG TTTGTTCCCA CCCTAACCAC ACCCCCTGTG
  R
  ATGTGCAACA GCTCTTTTAC TGAGAGTTGT GGGTGGCTCT GAAAAGAGCC TTTGGGTTGT
  TGGGCTTCTA AGCAGTTGGC CAAAGAAAAT TTACTTTTTC TTGGCTGCGG TTTTCTTTGG
  CTTAGCTGCC TTAGGCTTGG AGGTTTTTGG TTTGGCCGCT TTAGGCTTTA CCGTTTTCGC
  CTTGGCAGGG CTCTTGGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324290404	CHEV_13_23713616	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263971246					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23805730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	289 bp distal
Cpgi5368	CpG island 5368	286 bp proximal
Gm11398	predicted gene 11398	698 bp upstream
H1f4	H1.4 linker histone, cluster member	30 bp downstream
H2bc6	H2B clustered histone 6	639 bp upstream
Rr403657	regulatory region 403657	377 bp downstream
Rr475906	regulatory region 475906	664 bp distal
Rr475907	regulatory region 475907	133 bp distal
Rr475908	regulatory region 475908	414 bp proximal
Rr475909	regulatory region 475909	801 bp proximal
Tssr118843	transcription start site region 118843	104 bp upstream
Tssr118844	transcription start site region 118844	248 bp upstream
Tssr121728	transcription start site region 121728	632 bp upstream
Tssr121729	transcription start site region 121729	142 bp downstream
Tssr121730	transcription start site region 121730	190 bp downstream
Tssr121731	transcription start site region 121731	243 bp downstream
Tssr121732	transcription start site region 121732	270 bp downstream
Tssr121733	transcription start site region 121733	801 bp downstream