rs263975392 SNP Detail

Summary

• ID
  rs263975392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34506477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTCCGG TCTTGGCCTC
  GAGCTTGGCG AGGAGATCAG TCATGCAGTT CTTCTCGTGC AGGAACCGGT CGAACCTCTC
  CCTCATGGCT GCGGACATGG CTGGGCCGTT CGCGCCGCCC GGGATGCTCC GCAGCCGGCT
  GGACGCGGAA CCCAGCTGAC CGGGGCGGGG CGGGGGCGGG CGGTGCCGCG GCTCGTGCAC
  R
  AGGTTTCCGG GAGCGCGCCC CGCGCTCGCC TTCGCCCTGT TGGCGCGGAC CCCGCCCTGC
  CCCAGCCGAG CGCTCACCTC AGCTGCCACG CCCATACCCG GCTCACTGCG CTGCCCCCCC
  CCCCCCCCCC CCCCCCCCCC GCTGTAAGCA GCTGGACCTG CCCGGAGTCC GCCTGACTTT
  TTAAATCCAA TCGGTGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400238233	MGP_WTSI_18_34533078	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs263975392					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400238233	MGP_WTSI_18_34533078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34506477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	within coordinates
Reep5	receptor accessory protein 5	within coordinates
Rr352680	regulatory region 352680	within coordinates
Tssr152790	transcription start site region 152790	1579 bp upstream
Tssr152791	transcription start site region 152791	1437 bp upstream
Tssr152792	transcription start site region 152792	1368 bp upstream
Tssr152793	transcription start site region 152793	938 bp upstream
Tssr152794	transcription start site region 152794	924 bp upstream
Tssr152795	transcription start site region 152795	901 bp upstream
Tssr152796	transcription start site region 152796	118 bp upstream
Tssr152797	transcription start site region 152797	within coordinates
Tssr152798	transcription start site region 152798	78 bp downstream