rs263988620 SNP Detail

Summary

• ID
  rs263988620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTGGGC ACACAAAGGG
  GAGGGGGACC CCTAGCTGTC TCGTGGATCT ACAGAGGCAC CGTGGCTAGT GGGGGAGCTA
  GCACCTCCCG TGTGCATTTA TGACCCCATA GTGGCAGACA CACCAAATAC TCTTCACCCA
  TGAGTGGACA AGACAGAACG TGGCTACCCG GAGGAGAGAG GCAGCACAAG GCTGCTCGCC
  Y
  GGGAGAGCAT CATCACTAAG ATGTCGCCTC CAGCTCCTGC CTCTGTCCCC ACTGCCTGCA
  TCTCTAGCAT TTCTGTTGAC CACTGTTGGC TCCAATTGGA CTCAATTCCT GGTAAAGCTG
  TGCAAAGTGG GGGTGAGGGG GGCAGCAGGG AGAACCACAG CGGCTCGGCA CTGGTAGGAA
  CAGCAAGCTA CAAAGAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356251444	MGP_WTSI_2_156923685	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263988620					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356251444	MGP_WTSI_2_156923685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939869 () rs orientation: forward

Symbol	Name	Function Class
Samhd1	SAM domain and HD domain, 1	within coordinates
Tldc2	TBC/LysM associated domain containing 2	1467 bp downstream
Tssr27104	transcription start site region 27104	509 bp downstream
Tssr27105	transcription start site region 27105	554 bp downstream
Tssr27106	transcription start site region 27106	643 bp downstream
Tssr27107	transcription start site region 27107	787 bp downstream
Tssr27108	transcription start site region 27108	913 bp downstream
Tssr27109	transcription start site region 27109	985 bp downstream
Tssr27110	transcription start site region 27110	1039 bp downstream
Tssr27111	transcription start site region 27111	1190 bp downstream
Tssr27112	transcription start site region 27112	1220 bp downstream
Tssr27113	transcription start site region 27113	1237 bp downstream
Tssr27114	transcription start site region 27114	1311 bp downstream
Tssr27115	transcription start site region 27115	1427 bp downstream
Tssr27116	transcription start site region 27116	1524 bp downstream