rs263992096 SNP Detail

Summary

• ID
  rs263992096
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135695871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTGGGCT AAGAATGGGT CCACCATGAT
  CCCTTAGGAC GCAGAGAGGG GCTGGAGGAA GCAGCTTCCA CTGACCACAG CATGTCATCA
  GCCTTCTGTC CATTTCtcca gtcaatccct ggtcaaaaaa tacttggggg aaaaaatgtt
  G
  ccctaacact cacagacctt ttttttttct tgtcaatcat ttcccaaaca gtatagttta
  atgacaattt atataacatt acattgtgtt aggtattaac aataatacag ggatgactgc
  aagcatatgg gaggtttgca taggttatat                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993153	CHEV_1_137664710	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263992096					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135695871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	1155 bp distal
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	1186 bp downstream
Tssr224	transcription start site region 224	1932 bp downstream
Tssr8974	transcription start site region 8974	1958 bp downstream
Tssr8975	transcription start site region 8975	1925 bp downstream
Tssr8976	transcription start site region 8976	1908 bp downstream
Tssr8977	transcription start site region 8977	1893 bp downstream
Tssr8978	transcription start site region 8978	1876 bp downstream
Tssr8979	transcription start site region 8979	303 bp downstream