rs264001043 SNP Detail

Summary

• ID
  rs264001043
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115509205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGAGGGG ATCCTGAGAA GGTCGGAGGA
  GAGCAGCCCC GAAGTACTGA AAAGCTTCTG TCCTCCACCT CCTCTTCCTC CACCCCCTCC
  ACTCCGATCC TGGTGAAGCC TTGAAACTTG CGGTCTGGTG GGCAGAAAGT GGCTTTCCCC
  S
  GGTGCACGGT GAAGTGGGCC AGTGCTGTGC TTGATGTTGG ACCGGGGGTT CCCCTCTCTC
  AGCTGACCGC AAAGCCAGGC GGTGTGCCCC AGATTCTGGG AAGCTCAGAG GCCTTTGAGG
  AGGTGGGCTG CTGCCCTGGC CTCAGAGATT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892954	CHEV_3_115418474	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264001043					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115509205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	8 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	376 bp upstream
Rr583585	regulatory region 583585	523 bp distal
Rr583586	regulatory region 583586	within coordinates
Rr583587	regulatory region 583587	1007 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	501 bp upstream
Tssr31332	transcription start site region 31332	384 bp downstream
Tssr35276	transcription start site region 35276	1809 bp upstream
Tssr35277	transcription start site region 35277	1750 bp upstream
Tssr35278	transcription start site region 35278	759 bp upstream
Tssr35279	transcription start site region 35279	743 bp upstream
Tssr35280	transcription start site region 35280	693 bp upstream
Tssr35281	transcription start site region 35281	637 bp upstream
Tssr35282	transcription start site region 35282	609 bp upstream
Tssr35283	transcription start site region 35283	494 bp upstream