rs264003876 SNP Detail

Summary

• ID
  rs264003876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGGT CTCCCACTGA
  ACTAGGGCTT GCTAGTCTGG CTAGACAGAC TGGCTGACAA GCCCCTGGTG TCTGCCTGTC
  TTTGCCCCCA AGTCTGAGAT TGCAGATCTC CAAGGTGAAT CCTAGCCTTT ATGTAGCCAC
  TGGGGACGCA AGCCGGAGCT CCTCCTGCTT GTGCAGCAAA GATCTCACCC TCCGAGCAGC
  M
  ATCTCCTCAG TCCTGCTAGC GCTTCCTTTA TGTCACTATT TCCTCACTAA CATCAAACTA
  AAAACAAATT GTAGAATGAG CCGAGAAATC TGCTAGAAAC TCTTCTTTAG ATAGACCTTT
  AATTTTTGTT TTTTTAAGAA TGATTGCTGC CAGGCCGGGC GGTGGTGGCG CACGCCTTTA
  ATCCCAGCAC TCGGGAGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388803761	MGP_WTSI_13_60131982	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264003876					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388803761	MGP_WTSI_13_60131982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178435 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr481334	regulatory region 481334	835 bp distal
Rr481335	regulatory region 481335	517 bp distal
Tssr120109	transcription start site region 120109	992 bp downstream
Tssr120110	transcription start site region 120110	928 bp downstream
Tssr120111	transcription start site region 120111	912 bp downstream