rs264010309 SNP Detail

Summary

• ID
  rs264010309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70169321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCGGAAG TGATTAGAGT CCTCCGAGAC AAGCACTGGC
  CAGTGACGGG GCCCACGTCG CCCAGTGGAA CGCACAGGGT GTCCGCTCGG CCGGCCGGTC
  Y
  CACCGCTCCC CCAACCCCGG GAAGGACCTA TCACCCCGGC TCACGCGGCT CAGCCGACCG
  CTCCTCCCCA TCCGGGGACA GCGGCCCCGC GCTCACCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322696648	CHEV_8_72240570	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264010309					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70169321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm51532	predicted gene, 51532			481 bp upstream
Gm64048	predicted gene, 64048			within coordinates
Rr400882	regulatory region 400882			31 bp downstream
Rr400883	regulatory region 400883			194 bp upstream
Rr664553	regulatory region 664553			103 bp distal
Rr664554	regulatory region 664554			within coordinates
Rr664555	regulatory region 664555			143 bp proximal
Tssr77669	transcription start site region 77669			82 bp downstream
Tssr81531	transcription start site region 81531			247 bp upstream
Tssr81532	transcription start site region 81532			179 bp upstream
Tssr81533	transcription start site region 81533			156 bp downstream
Tssr81534	transcription start site region 81534			179 bp downstream
Zfp869	zinc finger protein 869			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant